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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5692009_5696810_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5692009 - 5696810
Intron Length:
4802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTAAATT
Flanking Amino Acid:
PGARTDLQDFERGVCDMTKE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
60.8
0.42
1.6
79.53
37.3

Associated Gene:

Gene:
EGF
Ensembl Gene ID:
ENSAPLG00000011867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038561
5673983 - 5730610
56628
ENSAPLT00000012395
5673983 - 5730610
56628