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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56925700_56926834_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56925700 - 56926834
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCACTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
AAAACATGAACT
Flanking Amino Acid:
ILSRSNHPKLGYSYAIVGIN
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
72.4
0.5
1
65.3
40.4
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
50.8
0.1
1.8
68.51
40.9

Associated Gene:

Gene:
ELMOD2
Ensembl Gene ID:
ENSAPLG00000008211
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008550
56921326 - 56927605
6280