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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56940197_56945291_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56940197 - 56945291
Intron Length:
5095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TAATACTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTGTATATAATA
Flanking Amino Acid:
INFREFVSGLSAACHGDLTE
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
65.5
0.35
1
63
43.3
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
54.6
0.14
1.8
68.99
37.6

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880