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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56945533_56946427_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56945533 - 56946427
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
GCCTTGTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GAGAATCTAACA
Flanking Amino Acid:
ELEELYALFKAEHLTSCYWG
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
69.3
0.44
1
60.5
44.8
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
45.1
-0.3
1.8
52.15
39

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880