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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56949925_56950857_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56949925 - 56950857
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGTTTTCAACA
Flanking Amino Acid:
LPDYYNTRVVGALVDQGVFE
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.4
31.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.7
0.69
0.9
77.7
35.5
Minor 5ss
48.1
-0.2
2.5
63.2
43.8
Minor BPS
66.1
0.5
1.5
74.78
37.2

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880