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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56955308_56956768_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56955308 - 56956768
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATGACT
Flanking Amino Acid:
SGSCMSSDDEVFTRSNSIIS
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.8
0.65
0.9
73.1
37.2
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
66
0.58
1.6
83.64
37.4

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880