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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56961302_56962324_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56961302 - 56962324
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTCACT
Flanking Amino Acid:
CFYSFLMGREAKLVIRWVDI
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.9
76.7
37.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
67.6
0.63
1.7
85.39
35.1

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880