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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56964243_56970602_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56964243 - 56970602
Intron Length:
6360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTTCTTATTT
Flanking Amino Acid:
DSLVYWTIACGCSRKEITEH
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.6
0.67
1
73.8
40
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
63.6
0.51
1.6
75.8
41.6

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880