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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_56970714_56985803_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56970714 - 56985803
Intron Length:
15090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
TCCCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGAGAATT
Flanking Amino Acid:
GGDGGGGGLAGLLVGTLDVV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.1
57.9
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.7
76.5
25.6
Minor 5ss
30.6
-2.2
3.2
31.8
42.1
Minor BPS
44.1
-0.3
2.3
70.15
40.9

Associated Gene:

Gene:
TBC1D9
Ensembl Gene ID:
ENSAPLG00000008419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008843
56937051 - 56985930
48880