About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57041000_57046831_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57041000 - 57046831
Intron Length:
5832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CAAAGCTCAATT
Flanking Amino Acid:
MNILKALGIPPNADCMDDIP
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.6
44.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.5
0.48
0.8
71.2
28.5
Minor 5ss
40.2
-1.1
2.8
51.1
45
Minor BPS
45.9
-0.2
2
59.09
44

Associated Gene:

Gene:
RNF150
Ensembl Gene ID:
ENSAPLG00000009408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009815
57015527 - 57128972
113446