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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57046929_57054643_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57046929 - 57054643
Intron Length:
7715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGAATTAAAA
Flanking Amino Acid:
PNDVVRILPCRHLFHKSCVD
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
52.2
0.07
2
71.18
40.3

Associated Gene:

Gene:
RNF150
Ensembl Gene ID:
ENSAPLG00000009408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009815
57015527 - 57128972
113446