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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57054727_57055136_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57054727 - 57055136
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAATGATGAATG
Flanking Amino Acid:
QVRTIRKGDKETEPDFDNCA
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
81.4
0.71
0.7
77.3
24.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
42.9
-0.6
2
46.36
39.9

Associated Gene:

Gene:
RNF150
Ensembl Gene ID:
ENSAPLG00000009408
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009815
57015527 - 57128972
113446