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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5712680_5713723_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5712680 - 5713723
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATCC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTAAATAGTC
Flanking Amino Acid:
RALDASNTTAGSISVQKEAG
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
63
36.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.6
0.8
0.7
85.1
29.7
Minor 5ss
37.5
-1.4
3.3
51.7
45
Minor BPS
43.5
-0.5
2.1
60.47
38.2

Associated Gene:

Gene:
EGF
Ensembl Gene ID:
ENSAPLG00000011867
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038561
5673983 - 5730610
56628
ENSAPLT00000012395
5673983 - 5730610
56628