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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57156591_57156853_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57156591 - 57156853
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATTAGTATTT
Flanking Amino Acid:
LAKHPCNASMECDKCQRRQK
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
69
31.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
36.7
-1.5
3.1
43.7
45.9
Minor BPS
44.5
-0.3
2.3
69.23
42.1

Associated Gene:

Gene:
ZNF330
Ensembl Gene ID:
ENSAPLG00000009489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009912
57156461 - 57165212
8752