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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57156874_57156975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57156874 - 57156975
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCCATGTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCTTGTTTAATG
Flanking Amino Acid:
NASMECDKCQRRQKNRAFCY
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
60.7
0.24
1
53.1
41.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
61.6
0.23
1.8
66.31
42.6

Associated Gene:

Gene:
ZNF330
Ensembl Gene ID:
ENSAPLG00000009489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009912
57156461 - 57165212
8752