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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57157047_57159122_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57157047 - 57159122
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTAAACA
Flanking Amino Acid:
VQKLPICAQCGKTKCMMKSS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
71
0.66
1.6
82.25
33.1

Associated Gene:

Gene:
ZNF330
Ensembl Gene ID:
ENSAPLG00000009489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009912
57156461 - 57165212
8752