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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57163099_57164175_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57163099 - 57164175
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCACC
Flanking Amino Acid:
LGQHSCLRCKACFCDDHVRS
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.8
69.5
30.9
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
55.2
0.15
1.7
66.58
39.6

Associated Gene:

Gene:
ZNF330
Ensembl Gene ID:
ENSAPLG00000009489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009912
57156461 - 57165212
8752