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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57184028_57187343_R

Intron Information:

Intron Rank:
130073
Intron Class:
major
Intron Phase:
Intron Coordinates:
57184028 - 57187343
Intron Length:
3316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.8
82.3
33.9
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046726
57180652 - 57187396
6745