Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5719710_5722002_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5719710 - 5722002

Intron Length:

2293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTTGGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACAAA

U12 Branch Point Sequence:

TGCCAGTTACAA

Flanking Amino Acid:

YVSDLQDYACNCVTGYVGER

Intron Amino Acid Position:

1057

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.5

27.8

Major BPS

0.15

1.3

65.4

Major PPT

81.5

0.71

0.9

79.8

32.1

Minor 5ss

37.7

-1.4

2.7

44.2

Minor BPS

38.3

-0.8

2.3

47.76

41.9

Associated Gene:

Gene:

EGF

Ensembl Gene ID:

ENSAPLG00000011867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038561

5673983 - 5730610

56628

ENSAPLT00000012395

5673983 - 5730610

56628