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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57279737_57359670_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57279737 - 57359670
Intron Length:
79934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTTGAAGT
Flanking Amino Acid:
FFIRALDCMRRNVVQLYRSN
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
59.3
0.37
1.7
78.48
38

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008387
57279697 - 57574540
294844