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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57368714_57371414_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57368714 - 57371414
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
GINEQQTLAERFGDTTLQEN
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.4
0.57
0.9
69
41.6
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618
ENSAPLT00000029393
57259646 - 57522704
263059
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000040756
57332118 - 57514749
182632