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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57371556_57376220_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57371556 - 57376220
Intron Length:
4665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTATCCTTATTC
Flanking Amino Acid:
EDFLPIITGRREHYVIEVQL
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
78.5
35.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.74
0.8
77.3
36.7
Minor 5ss
36.6
-1.5
3
52
44.2
Minor BPS
65.6
0.47
1.6
70.94
40.8

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029393
57259646 - 57522704
263059
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000040756
57332118 - 57514749
182632
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618