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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57377487_57378486_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57377487 - 57378486
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAGGTTGT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTGTCTTTATA
Flanking Amino Acid:
LRRDIVFSQALAGLVCGFII
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
63.8
43.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.4
0.8
0.7
80.6
31.5
Minor 5ss
42.7
-0.8
3.2
62.8
42.9
Minor BPS
61.5
0.35
1.7
74.21
37.7

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618
ENSAPLT00000029393
57259646 - 57522704
263059
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000040756
57332118 - 57514749
182632