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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57389115_57394527_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57389115 - 57394527
Intron Length:
5413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GCAGCAATAATT
Flanking Amino Acid:
HHSEYDEEEWDRVWANVGKS
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.2
0.7
0.9
77.7
36.3
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
45.6
-0.2
1.9
59.75
43.4

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000040756
57332118 - 57514749
182632
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618
ENSAPLT00000029393
57259646 - 57522704
263059