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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57440312_57448251_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57440312 - 57448251
Intron Length:
7940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
GATGACCTAATG
Flanking Amino Acid:
SKEQQLTLTLRTSDGGKTVG
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
82.6
0.73
0.9
73.6
41.5
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
45.8
-0.4
2
51.3
42.7

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029393
57259646 - 57522704
263059
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000040756
57332118 - 57514749
182632
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618