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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57513744_57522216_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57513744 - 57522216
Intron Length:
8473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCTGAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAATG
Flanking Amino Acid:
KSKTDVSIILKFQSGEPDLY
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.2
0.59
1
70.8
38.9
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
65.6
0.35
1.5
68.72
38.9

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021342
57332118 - 57526368
194251
ENSAPLT00000018893
57332118 - 57574540
242423
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000008387
57279697 - 57574540
294844
ENSAPLT00000039231
57332118 - 57624735
292618
ENSAPLT00000029393
57259646 - 57522704
263059