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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57583715_57586509_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57583715 - 57586509
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATC
Flanking Amino Acid:
CRVVGDEKLIEPRERWCRLK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.9
73
36.5
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
73.7
0.72
1.5
83.09
29.8

Associated Gene:

Gene:
INPP4B
Ensembl Gene ID:
ENSAPLG00000008033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048292
57332118 - 57624735
292618
ENSAPLT00000039231
57332118 - 57624735
292618