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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57700686_57700909_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57700686 - 57700909
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTAGCAGG
5'SS Class:
major
3'SS Sequence:
CTTGTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTGTTTATCT
Flanking Amino Acid:
MRLSGKSETGK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.2
64.7
46.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.6
0.6
0.9
70
40.6
Minor 5ss
24.8
-2.9
3.6
31.8
42.2
Minor BPS
58.2
0.34
2
79.06
43.7

Associated Gene:

Gene:
USP38
Ensembl Gene ID:
ENSAPLG00000019928
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017325
57700681 - 57709750
9070