About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57701009_57701639_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57701009 - 57701639
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
SVIQALFMATDFRRHVLSLN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
60
44.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
41.8
-0.9
3.1
54.6
43.2
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
USP38
Ensembl Gene ID:
ENSAPLG00000019928
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017325
57700681 - 57709750
9070