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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57701734_57702589_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57701734 - 57702589
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAG
5'SS Class:
strong_major
3'SS Sequence:
CATACACTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTCATACACT
Flanking Amino Acid:
HLFAFLAHTQREAYAPRIFF
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
64.3
41.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
62.7
0.29
1
55.4
38.8
Minor 5ss
37.4
-1.4
3
46.9
48.4
Minor BPS
50
0.08
2.3
79.5
42.4

Associated Gene:

Gene:
USP38
Ensembl Gene ID:
ENSAPLG00000019928
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017325
57700681 - 57709750
9070