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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57705130_57709588_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57705130 - 57709588
Intron Length:
4459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
ITKDNKLYLQEQELSARTQA
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
USP38
Ensembl Gene ID:
ENSAPLG00000019928
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017325
57700681 - 57709750
9070