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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5773881_5792361_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5773881 - 5792361
Intron Length:
18481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTACTCAACT
Flanking Amino Acid:
VLWSLSLAVFSILGAVRTAP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
63.3
0.5
1.8
80.01
41.5

Associated Gene:

Gene:
ELOVL6
Ensembl Gene ID:
ENSAPLG00000012370
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012878
5770499 - 5827583
57085