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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_577902_726690_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
577902 - 726690
Intron Length:
148789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
MASMLQKSDSNASFLRA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000047223
577881 - 865443
287563