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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57820037_57831103_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57820037 - 57831103
Intron Length:
11067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCATTGTACCA
Flanking Amino Acid:
DICGFNPTDEDAVKPPVSSL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
44.3
-0.4
2.2
58.48
42

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045614
57766802 - 57861447
94646
ENSAPLT00000035358
57766802 - 57861447
94646
ENSAPLT00000023635
57766802 - 57861447
94646
ENSAPLT00000009002
57766802 - 57861447
94646