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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57831318_57833944_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57831318 - 57833944
Intron Length:
2627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATGAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTCCTCATCT
Flanking Amino Acid:
NCQSKKPEPMSQGSPFISEE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
63.4
0.3
1.1
56
47.6
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
65.9
0.58
1.8
84.24
42.6

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045614
57766802 - 57861447
94646
ENSAPLT00000035358
57766802 - 57861447
94646
ENSAPLT00000023635
57766802 - 57861447
94646