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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57840377_57840581_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57840377 - 57840581
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATGTTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATATGTTAATT
Flanking Amino Acid:
NSLEGFHNHFKNRSMLTVGS
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.7
0.44
1
60.7
44.4
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
57.2
0.3
2.1
77.33
39.4

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023635
57766802 - 57861447
94646
ENSAPLT00000009002
57766802 - 57861447
94646
ENSAPLT00000045614
57766802 - 57861447
94646
ENSAPLT00000035358
57766802 - 57861447
94646