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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57855728_57856060_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
57855728 - 57856060
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TCCTGGTAATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTGTTTGTAAAA
Flanking Amino Acid:
RSPITRSFARDSSRFPMSPR
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
59.9
0.22
1
59
41
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
50.3
0.01
2.1
67.43
39.5

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045614
57766802 - 57861447
94646
ENSAPLT00000023635
57766802 - 57861447
94646
ENSAPLT00000009002
57766802 - 57861447
94646