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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57855728_57858448_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57855728 - 57858448
Intron Length:
2721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTATCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
RSPITRSFAREEESFYCTVP
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.3
0.75
0.7
81.5
30.1
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035358
57766802 - 57861447
94646