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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57856185_57859178_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57856185 - 57859178
Intron Length:
2994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
ATTAAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTGTATTAAAA
Flanking Amino Acid:
MNPNQSTEDPNLFGSNSLDG
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
70
35.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70
0.45
1
64.4
45
Minor 5ss
43.3
-0.7
2.5
56
42.5
Minor BPS
58.4
0.26
1.8
73.41
38.1

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045614
57766802 - 57861447
94646
ENSAPLT00000023635
57766802 - 57861447
94646
ENSAPLT00000009002
57766802 - 57861447
94646