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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57859302_57859549_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57859302 - 57859549
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGTCTTTATCC
Flanking Amino Acid:
DSGKSTPPRKKKSSGSGSSV
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.8
0.69
0.9
73.6
40.9
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
70.4
0.62
1.6
77.87
38.4

Associated Gene:

Gene:
GAB1
Ensembl Gene ID:
ENSAPLG00000008645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035358
57766802 - 57861447
94646
ENSAPLT00000023635
57766802 - 57861447
94646
ENSAPLT00000009002
57766802 - 57861447
94646
ENSAPLT00000045614
57766802 - 57861447
94646