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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57865318_57873233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57865318 - 57873233
Intron Length:
7916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTCTAATT
Flanking Amino Acid:
MLQESFDDASPGK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.8
27
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
62.4
0.47
1.6
79.49
37.4

Associated Gene:

Gene:
SMARCA5
Ensembl Gene ID:
ENSAPLG00000009206
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009672
57865187 - 57893660
28474