About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57872134_57873233_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
57872134 - 57873233
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAATTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTCTAATT
Flanking Amino Acid:
IWYKAGRPLAESFDDASPGK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
74
37
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.8
27
Minor 5ss
49.1
-0.1
2.8
77.3
37.4
Minor BPS
62.4
0.47
1.6
79.49
37.4

Associated Gene:

Gene:
SMARCA5
Ensembl Gene ID:
ENSAPLG00000009206
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041451
57871788 - 57894587
22800