Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57882783_57883350_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57882783 - 57883350

Intron Length:

568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATTGAG

5'SS Class:

major

3'SS Sequence:

TTCTTTGATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTTTCTTTGATA

Flanking Amino Acid:

YVGLSKMQREWYTRILMKDI

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

66.9

38.5

Major BPS

0.85

0.9

39.9

Major PPT

80.7

0.69

0.9

76.3

36.9

Minor 5ss

32.2

-2

3.1

41.7

Minor BPS

80.9

0.97

0.9

85.86

25.8

Associated Gene:

Gene:

SMARCA5

Ensembl Gene ID:

ENSAPLG00000009206

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041451

57871788 - 57894587

22800

ENSAPLT00000009672

57865187 - 57893660

28474