About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_57883578_57885161_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57883578 - 57885161
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTACCCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTACCCCAAACA
Flanking Amino Acid:
DKLLPKLKEQDSRVLIFSQM
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
76.4
39.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
64.5
0.33
1
59.5
35.7
Minor 5ss
42.9
-0.8
3.1
60.3
44.4
Minor BPS
53
0.09
2
70.89
40.7

Associated Gene:

Gene:
SMARCA5
Ensembl Gene ID:
ENSAPLG00000009206
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041451
57871788 - 57894587
22800
ENSAPLT00000009672
57865187 - 57893660
28474