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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58209197_58210277_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58209197 - 58210277
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAA
5'SS Class:
major
3'SS Sequence:
CCAACTTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCTCCAACT
Flanking Amino Acid:
LDDMEEMDGLSDFTGSVLRL
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
70.4
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.5
0.48
0.9
68.3
37
Minor 5ss
31.1
-2.2
3.2
39.8
45.8
Minor BPS
53
0.17
1.9
76.2
39.8

Associated Gene:

Gene:
HHIP
Ensembl Gene ID:
ENSAPLG00000009975
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038965
58156790 - 58228209
71420
ENSAPLT00000010388
58156790 - 58229038
72249