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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58214460_58215055_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58214460 - 58215055
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
PVLGFGEDELGEIYILSSSK
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
HHIP
Ensembl Gene ID:
ENSAPLG00000009975
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038965
58156790 - 58228209
71420
ENSAPLT00000010388
58156790 - 58229038
72249