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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58280975_58310777_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58280975 - 58310777
Intron Length:
29803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGTTCCTGAATA
Flanking Amino Acid:
NNFHNLQEIRQLELVEPSGW
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
65
42.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79
0.65
1
76.6
37.7
Minor 5ss
31.7
-2.1
3.1
31.8
42.6
Minor BPS
75.6
0.8
1.3
81.43
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029189
58280744 - 58315537
34794
ENSAPLT00000017967
58280744 - 58317404
36661
ENSAPLT00000010690
58280744 - 58317404
36661