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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58311733_58313101_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58311733 - 58313101
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATCA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATTCAAGATT
Flanking Amino Acid:
AVWSLSSCKPGFGVDQLRDD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
64.7
36.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.3
0.84
0.6
88.1
21.7
Minor 5ss
36.2
-1.6
3.3
48.1
47.6
Minor BPS
46.5
-0.1
1.9
66.15
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017967
58280744 - 58317404
36661
ENSAPLT00000010690
58280744 - 58317404
36661
ENSAPLT00000029189
58280744 - 58315537
34794