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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58313219_58315120_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58313219 - 58315120
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73
34.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
34.2
-1.8
2.8
41.4
44.9
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029189
58280744 - 58315537
34794
ENSAPLT00000017967
58280744 - 58317404
36661