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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_58315257_58317309_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58315257 - 58317309
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTGTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTCAGTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.2
0.66
0.9
76.5
37.6
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
49.3
0.03
2.3
75.82
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010264
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017967
58280744 - 58317404
36661